Downloads

ConVarT is a free, open-source and user-friendly web-based tool.
Therefore, ConVarT enables researchers to download and use the data using the links on the names of the files.


view_listDownloads for the Tables in ConVarT
File Name filter_list File Description filter_list Type filter_list Size filter_list Last Update filter_list
NO RESULT FOUND
ClinVar Whole ClinVar Whole Data .TXT 353 MB February, 2019
ClinVar A. acid ClinVar Data (only amino acid subs.) in GRCh37 .CSV 15 MB February, 2019
gnomAD gnomAD (only amino acid subs.) in GRCh37 .CSV 312 MB June, 2019
COSMIC COSMIC Whole Data in GRCh37 .CSV 346 MB May, 2019
PTM PTMs Whole Data in GRCh37 from PhosphoSitePlus .CSV 58 MB May, 2019
Conservation Scores All of the conservation scores across the species for each human protein transcript. .CSV 14 MB June, 2019
DisGeNET Table Disease ID and Gene ID table from DisGeNET . .CSV 3 MB May, 2019
DisGeNET Info Disease ID and Disease Info from DisGeNET . .CSV 621 KB May, 2019
Homology Curation ConVarT Homology Curation. .CSV 1 MB May, 2019
Pfam Domains All of the Pfam protein domains with scores that are generated using human protein transcripts in ConVarT. .CSV 10 MB June, 2019
Pfam D. Descriptions Descriptions of Pfam domains with their IDs .CSV 1 MB Aprilil, 2019

view_listDownloads for the Sequence Files used in ConVarT
Organism filter_list Organism Name filter_list Taxonomy ID filter_list Source filter_list Type filter_list Info filter_list Link filter_list
NO RESULT FOUND
Human Homo sapiens 9606 NCBI Protein GRCh37.p13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.25_GRCh37.p13/GCF_000001405.25_GRCh37.p13_protein.faa.gz
Human Homo sapiens 9606 NCBI Protein GRCh37 ftp://ftp.ensembl.org/pub/grch37/current/fasta/homo_sapiens/pep/Homo_sapiens.GRCh37.pep.all.fa.gz
Chimp Pan troglodytes 9598 NCBI Protein Clint_PTRv2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/880/755/GCF_002880755.1_Clint_PTRv2/GCF_002880755.1_Clint_PTRv2_protein.faa.gz>
Macaque Macaca mulatta 9544 NCBI Protein Mmul_8.0.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/772/875/GCF_000772875.2_Mmul_8.0.1/GCF_000772875.2_Mmul_8.0.1_protein.faa.gz
Rat Rattus norvegicus 10116 NCBI Protein Rnor_6.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/895/GCF_000001895.5_Rnor_6.0/GCF_000001895.5_Rnor_6.0_protein.faa.gz
Mouse Mus musculus 10090 NCBI Protein GRCm38.p6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/635/GCF_000001635.26_GRCm38.p6/GCF_000001635.26_GRCm38.p6_protein.faa.gz
Zebrafish Danio rerio 7955 NCBI Protein GRCz11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/035/GCF_000002035.6_GRCz11/GCF_000002035.6_GRCz11_protein.faa.gz
Frog Xenopus tropicalis 8364 NCBI Protein Xenopus_tropicalis_v9.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/195/GCF_000004195.3_Xenopus_tropicalis_v9.1/GCF_000004195.3_Xenopus_tropicalis_v9.1_protein.faa.gz
Fruitfly Drosophila melanogaster 7227 NCBI Protein Release 6 plus ISO1 MT ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/215/GCF_000001215.4_Release_6_plus_ISO1_MT/GCF_000001215.4_Release_6_plus_ISO1_MT_protein.faa.gz
Worm Caenorhabditis elegans 6239 NCBI Protein WBcel235 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/985/GCF_000002985.6_WBcel235/GCF_000002985.6_WBcel235_protein.faa.gz

view_listDownloads for the GPFF Files used in ConVarT
Organism filter_list Organism Name filter_list Taxonomy ID filter_list Source filter_list Type filter_list Link filter_list
NO RESULT FOUND
Human Homo sapiens 9606 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.25_GRCh37.p13/GCF_000001405.25_GRCh37.p13_protein.gpff.gz
Chimp Pan troglodytes 9598 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/880/755/GCF_002880755.1_Clint_PTRv2/GCF_002880755.1_Clint_PTRv2_protein.gpff.gz
Macaque Macaca mulatta 9544 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/772/875/GCF_000772875.2_Mmul_8.0.1/GCF_000772875.2_Mmul_8.0.1_protein.gpff.gz
Rat Rattus norvegicus 10116 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/895/GCF_000001895.5_Rnor_6.0/GCF_000001895.5_Rnor_6.0_protein.gpff.gz
Mouse Mus musculus 10090 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/635/GCF_000001635.26_GRCm38.p6/GCF_000001635.26_GRCm38.p6_protein.gpff.gz
Zebrafish Danio rerio 7955 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/035/GCF_000002035.6_GRCz11/GCF_000002035.6_GRCz11_protein.gpff.gz
Frog Xenopus tropicalis 8364 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/195/GCF_000004195.3_Xenopus_tropicalis_v9.1/GCF_000004195.3_Xenopus_tropicalis_v9.1_protein.gpff.gz
Fruitfly Drosophila melanogaster 7227 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/215/GCF_000001215.4_Release_6_plus_ISO1_MT/GCF_000001215.4_Release_6_plus_ISO1_MT_protein.gpff.gz
Worm Caenorhabditis elegans 6239 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/985/GCF_000002985.6_WBcel235/GCF_000002985.6_WBcel235_protein.gpff.gz

view_listDownloads for the Sources used in ConVarT