Downloads

ConVarT is a free, open-source and user-friendly web-based tool.
Therefore, ConVarT enables researchers to download and use the data using the links on the names of the files.

view_listDownloads for the Tables in Article
File Name filter_list File Description filter_list Type filter_list Size filter_list
NO RESULT FOUND
Table 1 Human and Mouse with Orthologous Variants (All) .XLSX 17 MB
Table 2 Human variants and C. elegans Orthologous Variations (All) .XLSX 40 MB
Table 3 C. elegans Variants Without Human Equivalent Variants (SIFT and Disease added) .XLSX 14 MB
Table 4 C. elegans Phenotypic Variants without Human Equivalent Variants (SIFT and Disease added) .XLSX 408 KB
Table 5 Human Benign Variants and C. elegans Phenotypic Variants .XLSX 20 KB
Table 6 Human Benign Variants (ClinVar) and C. elegans Unknown Variants .XLSX 532 KB
Table 7 Human Benign Variants (ClinVar) and Mouse Phenotypic Variants .XLSX 128 KB
Table 8 Human Benign Variants (ClinVar) and Mouse Unknown Variants .XLSX 248 KB
Table 9 Human Variants and C. elegans Orthologous Variants (No mouse orthologous genes) .XLSX 264 KB
Table 10 Human Variants and Mouse Double Orthologous Variants (No C. elegans orthologous genes) .XLSX 3.9 MB
Table 11 Human Pathogenic variants and C. elegans Phenotypic variants .XLSX 164 KB
Table 12 Human Pathogenic variants and C. elegans Unknown variants .XLSX 428 KB
Table 13 Human Pathogenic variants and Mouse Phenotypic variants .XLSX 32 KB
Table 14 Human Pathogenic variants and Mouse Unknown variants .XLSX 84 KB
Table 15 Mouse Variants Without Human Equivalent Variants (SIFT and Disease added) .XLSX 11 MB
Table 16 Mouse Phenotypic Variants Without Human Equivalent Variants (SIFT and Disease added) .XLSX 1.9 MB

view_listDownloads for the Tables in ConVarT
File Name filter_list File Description filter_list Type filter_list Size filter_list Last Update filter_list
NO RESULT FOUND
ClinVar ClinVar Whole Data .CSV 161 MB January, 2021
gnomAD gnomAD (only amino acid subs.) in GRCh37 .CSV 2.1 GB June, 2019
COSMIC COSMIC Whole Data in GRCh37 .CSV 1.9 GB May, 2019
PTM PTMs Whole Data in GRCh37 from PhosphoSitePlus .CSV 58 MB May, 2019
Mouse Mouse Variants .CSV 26 MB February, 2021
C. Elegans C. Elegans Variants .CSV 58 MB January, 2021
TOPMed Human Variants in TOPMed .CSV 2.91 GB January, 2021
DisGeNET Table Disease ID and Gene ID table from DisGeNET . .CSV 32 MB May, 2019
DisGeNET Info Disease ID and Disease Info from DisGeNET . .CSV 552 KB May, 2019
Homology Curation ConVarT Homology Curation. .CSV 1.3 MB May, 2019
Pfam Domains All of the Pfam protein domains with scores that are generated using human protein transcripts in ConVarT. .CSV 8.4 MB June, 2019
Pfam D. Descriptions Descriptions of Pfam domains with their IDs .CSV 985 KB April, 2019

view_listDownloads for the Sequence Files used in ConVarT
Organism filter_list Organism Name filter_list Taxonomy ID filter_list Source filter_list Type filter_list Info filter_list Link filter_list
NO RESULT FOUND
Human Homo sapiens 9606 NCBI Protein GRCh37.p13 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.25_GRCh37.p13/GCF_000001405.25_GRCh37.p13_protein.faa.gz
Human Homo sapiens 9606 NCBI Protein GRCh37 ftp://ftp.ensembl.org/pub/grch37/current/fasta/homo_sapiens/pep/Homo_sapiens.GRCh37.pep.all.fa.gz
Chimp Pan troglodytes 9598 NCBI Protein Clint_PTRv2 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/880/755/GCF_002880755.1_Clint_PTRv2/GCF_002880755.1_Clint_PTRv2_protein.faa.gz>
Macaque Macaca mulatta 9544 NCBI Protein Mmul_8.0.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/772/875/GCF_000772875.2_Mmul_8.0.1/GCF_000772875.2_Mmul_8.0.1_protein.faa.gz
Rat Rattus norvegicus 10116 NCBI Protein Rnor_6.0 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/895/GCF_000001895.5_Rnor_6.0/GCF_000001895.5_Rnor_6.0_protein.faa.gz
Mouse Mus musculus 10090 NCBI Protein GRCm38.p6 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/635/GCF_000001635.26_GRCm38.p6/GCF_000001635.26_GRCm38.p6_protein.faa.gz
Zebrafish Danio rerio 7955 NCBI Protein GRCz11 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/035/GCF_000002035.6_GRCz11/GCF_000002035.6_GRCz11_protein.faa.gz
Frog Xenopus tropicalis 8364 NCBI Protein Xenopus_tropicalis_v9.1 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/195/GCF_000004195.3_Xenopus_tropicalis_v9.1/GCF_000004195.3_Xenopus_tropicalis_v9.1_protein.faa.gz
Fruitfly Drosophila melanogaster 7227 NCBI Protein Release 6 plus ISO1 MT ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/215/GCF_000001215.4_Release_6_plus_ISO1_MT/GCF_000001215.4_Release_6_plus_ISO1_MT_protein.faa.gz
Worm Caenorhabditis elegans 6239 NCBI Protein WBcel235 ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/985/GCF_000002985.6_WBcel235/GCF_000002985.6_WBcel235_protein.faa.gz

view_listDownloads for the GPFF Files used in ConVarT
Organism filter_list Organism Name filter_list Taxonomy ID filter_list Source filter_list Type filter_list Link filter_list
NO RESULT FOUND
Human Homo sapiens 9606 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.25_GRCh37.p13/GCF_000001405.25_GRCh37.p13_protein.gpff.gz
Chimp Pan troglodytes 9598 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/880/755/GCF_002880755.1_Clint_PTRv2/GCF_002880755.1_Clint_PTRv2_protein.gpff.gz
Macaque Macaca mulatta 9544 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/772/875/GCF_000772875.2_Mmul_8.0.1/GCF_000772875.2_Mmul_8.0.1_protein.gpff.gz
Rat Rattus norvegicus 10116 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/895/GCF_000001895.5_Rnor_6.0/GCF_000001895.5_Rnor_6.0_protein.gpff.gz
Mouse Mus musculus 10090 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/635/GCF_000001635.26_GRCm38.p6/GCF_000001635.26_GRCm38.p6_protein.gpff.gz
Zebrafish Danio rerio 7955 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/035/GCF_000002035.6_GRCz11/GCF_000002035.6_GRCz11_protein.gpff.gz
Frog Xenopus tropicalis 8364 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/195/GCF_000004195.3_Xenopus_tropicalis_v9.1/GCF_000004195.3_Xenopus_tropicalis_v9.1_protein.gpff.gz
Fruitfly Drosophila melanogaster 7227 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/215/GCF_000001215.4_Release_6_plus_ISO1_MT/GCF_000001215.4_Release_6_plus_ISO1_MT_protein.gpff.gz
Worm Caenorhabditis elegans 6239 NCBI GPFF ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/985/GCF_000002985.6_WBcel235/GCF_000002985.6_WBcel235_protein.gpff.gz

view_listDownloads for the Sources used in ConVarT
Source filter_list Version/Date filter_list Link filter_list
NO RESULT FOUND
ClinVar February, 2019 ftp://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz
gnomAD June, 2019 https://gnomad.broadinstitute.org/api/
Pfam Domain February, 2019 ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/, ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.clans.tsv.gz
MGI Vertebrate Homology February, 2019 http://www.informatics.jax.org/downloads/reports/HOM_AllOrganism.rpt
DIOPT March, 2019 https://www.flyrnai.org/cgi-bin/DRSC_orthologs.pl
DisGeNET March, 2019 http://www.disgenet.org/static/disgenet_ap1/files/downloads/curated_gene_disease_associations.tsv.gz
MeSH Browser March, 2019 https://meshb.nlm.nih.gov/treeView
ZFIN -ZebraFish Database- April, 2019 https://zfin.org/downloads/human_orthos.txt,https://zfin.org/downloads/gene.txt
PhosphoSitePlus April, 2019 https://www.phosphosite.org/staticDownloads
COSMIC April, 2019 https://cancer.sanger.ac.uk/cosmic/download